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Applications and libraries/Bioinformatics

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== Ketil Malde's Bioinf tools ==
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== Ketil Malde's Bioinformatics stuff ==
   
;[http://www.ii.uib.no/~ketil/bioinformatics bioinformatics]
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;[http://www.ii.uib.no/~ketil/bioinformatics Ketil's bioinformatics pages]
:A sequence clustering tool, xsact (currently in revision 1.5), also a sequence assembly tool.
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:Some tools, implemented in Haskell, are available from this site
   
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* A sequence clustering tool, xsact (currently in revision 1.5).
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* A sequence assembly tool, xtract, which uses an interesting algorithm based on de Bruijn graphs, but unfortunately is hard to get to work right. Unless you plan to fix it, use CAP3 instead.
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* A sequence masking tool, masking ESTs based on a statistical measure of word frequencies.
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* A simple and efficient tool, rselect, for extracting random sets of sequences
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* A bioinformatics library, currently containing bits and pieces needed for the above programs.
 
{{LibrariesPage}}
 
{{LibrariesPage}}

Revision as of 09:02, 6 December 2006

Ketil Malde's Bioinformatics stuff

Ketil's bioinformatics pages
Some tools, implemented in Haskell, are available from this site
  • A sequence clustering tool, xsact (currently in revision 1.5).
  • A sequence assembly tool, xtract, which uses an interesting algorithm based on de Bruijn graphs, but unfortunately is hard to get to work right. Unless you plan to fix it, use CAP3 instead.
  • A sequence masking tool, masking ESTs based on a statistical measure of word frequencies.
  • A simple and efficient tool, rselect, for extracting random sets of sequences
  • A bioinformatics library, currently containing bits and pieces needed for the above programs.

This page contains a list of libraries and tools in a certain category. For a comprehensive list of such pages, see Libraries and tools.